VFB connect API overview

The VFB connect API provides programmatic access to the databases underlying VFB

VFB connect API overview

The VFB connect API provides programmatic access to the databases underlying Virtual Fly Brain.

At the core of Virtual Fly Brain is a set of curated terms for Drosophila neuro-anatomy organised into a queryable classification, including terms for brain regions, e.g. nodulus and neurons e.g. MBON01. These terms are used to annotate and classify individual brain regions and neurons in images and connectomics data. For example the term MBON01 is used to classify individual neurons from sources including the CATMAID-FAFB and Neuprint-HemiBrain databases. VFB stores both registered 3D images and connectomics data (where available) for all of these neurons.

A single VfbConnect object wraps connections and canned queries against all open VFB databases. It includes methods for retreiving metadata about anatomy, individual brain regions and neurons including IDs for these that can be used for queries against other databases (e.g. CATMAID & neuprint). It provides methods for downloading images and connectomics data. It provides access to sophisticated queries for anatomical classes and individual neurons accoring to their classification & properties.

Locations for methods under a VfbConnect object.

  1. Under vc.neo_query_wrapper are
    1. A set of methods that take lists of IDs as a primary argument and return metadata.
    2. A set of methods for mapping between VFB IDs and external IDs
  2. Directly under vc are:
    1. A set of methods that take the names of classes in VFB e.g. ’nodulus’ or ‘Kenyon cell’, or simple query expressions using the names of classes and return metadata about the classes.
    2. A set methods for querying connectivity and similarity
  3. Direct access to API queries is provided under the ’nc’ and ‘oc’ attributes for Neo4J and OWL queries respectively. We will not cover details of how to use these here.

Note: available methods and their documentation are easy to explore in DeepNote. Tab completion and type adhead can be used to help find methods. Float your cursor over a method to see its signature and docstring.

1. vc.neo_query_wrapper methods overview

1.1 vc.neo_query_wrapper TermInfo queries return the results of a VFB Term Information window as JSON, following the VFB_JSON standard, or a summary that can easily be converted into a DataFrame.

# A query for full TermInfo.  This probably produces more information than you will need for most purposes.

vc.neo_query_wrapper.get_type_TermInfo(['FBbt_00003686'])


    [{'term': {'core': {'iri': 'http://purl.obolibrary.org/obo/FBbt_00003686',
        'symbol': '',
        'types': ['Entity',
         'Anatomy',
         'Nervous_system',
         'Cell',
         'Neuron',
         'Class'],
        'label': 'Kenyon cell',
        'short_form': 'FBbt_00003686'},
       'description': ['Intrinsic neuron of the mushroom body. They have tightly-packed cell bodies, situated in the rind above the calyx of the mushroom body (Ito et al., 1997). Four short fascicles, one per lineage, extend from the cell bodies of the Kenyon cells into the calyx (Ito et al., 1997). These 4 smaller fascicles converge in the calyx where they arborize and form pre- and post-synaptic terminals (Christiansen et al., 2011), with different Kenyon cells receiving input in different calyx regions/accessory calyces (Tanaka et al., 2008). They emerge from the calyx as a thick axon bundle referred to as the peduncle that bifurcates to innervate the dorsal and medial lobes of the mushroom body (Tanaka et al., 2008).'],
       'comment': ['Pre-synaptic terminals were identified using two presynaptic markers (Brp and Dsyd-1) and post-synaptic terminals by labelling a subunit of the acetylcholine receptor (Dalpha7) in genetically labelled Kenyon cells (Christiansen et al., 2011).']},
      'query': 'Get JSON for Class',
      'version': '44725ae',
      'parents': [{'iri': 'http://purl.obolibrary.org/obo/FBbt_00001366',
        'symbol': '',
        'types': ['Entity',
         'Anatomy',
         'Nervous_system',
         'Cell',
         'Neuron',
         'Class'],
        'label': 'supraesophageal ganglion neuron',
        'short_form': 'FBbt_00001366'},
       {'iri': 'http://purl.obolibrary.org/obo/FBbt_00007484',
        'symbol': '',
        'types': ['Entity',
         'Anatomy',
         'Nervous_system',
         'Cell',
         'Neuron',
         'Class'],
        'label': 'mushroom body intrinsic neuron',
        'short_form': 'FBbt_00007484'}],
      'relationships': [{'relation': {'type': 'develops_from',
         'iri': 'http://purl.obolibrary.org/obo/RO_0002202',
         'label': 'develops from'},
        'object': {'iri': 'http://purl.obolibrary.org/obo/FBbt_00007113',
         'symbol': '',
         'types': ['Entity',
          'Anatomy',
          'Nervous_system',
          'Cell',
          'Neuroblast',
          'Class'],
         'label': 'mushroom body neuroblast',
         'short_form': 'FBbt_00007113'}},
       {'relation': {'type': 'overlaps',
         'iri': 'http://purl.obolibrary.org/obo/RO_0002131',
         'label': 'overlaps'},
        'object': {'iri': 'http://purl.obolibrary.org/obo/FBbt_00003687',
         'symbol': '',
         'types': ['Entity',
          'Synaptic_neuropil',
          'Anatomy',
          'Nervous_system',
          'Synaptic_neuropil_domain',
          'Class'],
         'label': 'mushroom body pedunculus',
         'short_form': 'FBbt_00003687'}},
       {'relation': {'type': 'part_of',
         'iri': 'http://purl.obolibrary.org/obo/BFO_0000050',
         'label': 'is part of'},
        'object': {'iri': 'http://purl.obolibrary.org/obo/FBbt_00005801',
         'symbol': '',
         'types': ['Entity',
          'Synaptic_neuropil',
          'Anatomy',
          'Nervous_system',
          'Synaptic_neuropil_block',
          'Class'],
         'label': 'mushroom body',
         'short_form': 'FBbt_00005801'}},
       {'relation': {'type': 'receives_synaptic_input_in',
         'iri': 'http://purl.obolibrary.org/obo/RO_0013002',
         'label': 'receives synaptic input in'},
        'object': {'iri': 'http://purl.obolibrary.org/obo/FBbt_00003685',
         'symbol': '',
         'types': ['Entity',
          'Synaptic_neuropil',
          'Anatomy',
          'Nervous_system',
          'Synaptic_neuropil_domain',
          'Class'],
         'label': 'mushroom body calyx',
         'short_form': 'FBbt_00003685'}}],
      'xrefs': [],
      'anatomy_channel_image': [{'channel_image': {'channel': {'iri': 'http://virtualflybrain.org/reports/VFBc_jrchjwig',
          'symbol': '',
          'types': ['Entity', 'Individual'],
          'label': 'KCg-t_R - 5812981989_c',
          'short_form': 'VFBc_jrchjwig'},
         'image': {'template_channel': {'iri': 'http://virtualflybrain.org/reports/VFBc_00101567',
           'symbol': '',
           'types': ['Entity', 'Individual', 'Template'],
           'label': 'JRC2018Unisex_c',
           'short_form': 'VFBc_00101567'},
          'index': [],
          'template_anatomy': {'iri': 'http://virtualflybrain.org/reports/VFB_00101567',
           'symbol': '',
           'types': ['Entity',
            'has_image',
            'Adult',
            'Anatomy',
            'Nervous_system',
            'Individual',
            'Template'],
           'label': 'JRC2018Unisex',
           'short_form': 'VFB_00101567'},
          'image_folder': 'http://www.virtualflybrain.org/data/VFB/i/jrch/jwig/VFB_00101567/'},
         'imaging_technique': {'iri': 'http://purl.obolibrary.org/obo/FBbi_00050000',
          'symbol': 'FIB-SEM',
          'types': ['Entity', 'Class'],
          'label': 'focussed ion beam scanning electron microscopy (FIB-SEM)',
          'short_form': 'FBbi_00050000'}},
        'anatomy': {'iri': 'http://virtualflybrain.org/reports/VFB_jrchjwig',
         'symbol': '',
         'types': ['Entity',
          'has_image',
          'Adult',
          'Anatomy',
          'has_neuron_connectivity',
          'Cell',
          'Individual',
          'has_region_connectivity',
          'NBLAST',
          'Nervous_system',
          'Neuron'],
         'label': 'KCg-t_R - 5812981989',
         'short_form': 'VFB_jrchjwig'}},
       {'channel_image': {'channel': {'iri': 'http://virtualflybrain.org/reports/VFBc_jrchjwig',
          'symbol': '',
          'types': ['Entity', 'Individual'],
          'label': 'KCg-t_R - 5812981989_c',
          'short_form': 'VFBc_jrchjwig'},
         'image': {'template_channel': {'iri': 'http://virtualflybrain.org/reports/VFBc_00101384',
           'symbol': '',
           'types': ['Entity', 'Individual', 'Template'],
           'label': 'JRC_FlyEM_Hemibrain_c',
           'short_form': 'VFBc_00101384'},
          'index': [],
          'template_anatomy': {'iri': 'http://virtualflybrain.org/reports/VFB_00101384',
           'symbol': '',
           'types': ['Entity',
            'has_image',
            'Adult',
            'Anatomy',
            'Nervous_system',
            'Individual',
            'Template'],
           'label': 'JRC_FlyEM_Hemibrain',
           'short_form': 'VFB_00101384'},
          'image_folder': 'http://www.virtualflybrain.org/data/VFB/i/jrch/jwig/VFB_00101384/'},
         'imaging_technique': {'iri': 'http://purl.obolibrary.org/obo/FBbi_00050000',
          'symbol': 'FIB-SEM',
          'types': ['Entity', 'Class'],
          'label': 'focussed ion beam scanning electron microscopy (FIB-SEM)',
          'short_form': 'FBbi_00050000'}},
        'anatomy': {'iri': 'http://virtualflybrain.org/reports/VFB_jrchjwig',
         'symbol': '',
         'types': ['Entity',
          'has_image',
          'Adult',
          'Anatomy',
          'has_neuron_connectivity',
          'Cell',
          'Individual',
          'has_region_connectivity',
          'NBLAST',
          'Nervous_system',
          'Neuron'],
         'label': 'KCg-t_R - 5812981989',
         'short_form': 'VFB_jrchjwig'}},
       {'channel_image': {'channel': {'iri': 'http://virtualflybrain.org/reports/VFBc_jrchjwih',
          'symbol': '',
          'types': ['Entity', 'Individual'],
          'label': 'KCg-t_R - 1392655948_c',
          'short_form': 'VFBc_jrchjwih'},
         'image': {'template_channel': {'iri': 'http://virtualflybrain.org/reports/VFBc_00101567',
           'symbol': '',
           'types': ['Entity', 'Individual', 'Template'],
           'label': 'JRC2018Unisex_c',
           'short_form': 'VFBc_00101567'},
          'index': [],
          'template_anatomy': {'iri': 'http://virtualflybrain.org/reports/VFB_00101567',
           'symbol': '',
           'types': ['Entity',
            'has_image',
            'Adult',
            'Anatomy',
            'Nervous_system',
            'Individual',
            'Template'],
           'label': 'JRC2018Unisex',
           'short_form': 'VFB_00101567'},
          'image_folder': 'http://www.virtualflybrain.org/data/VFB/i/jrch/jwih/VFB_00101567/'},
         'imaging_technique': {'iri': 'http://purl.obolibrary.org/obo/FBbi_00050000',
          'symbol': 'FIB-SEM',
          'types': ['Entity', 'Class'],
          'label': 'focussed ion beam scanning electron microscopy (FIB-SEM)',
          'short_form': 'FBbi_00050000'}},
        'anatomy': {'iri': 'http://virtualflybrain.org/reports/VFB_jrchjwih',
         'symbol': '',
         'types': ['Entity',
          'has_image',
          'Adult',
          'Anatomy',
          'has_neuron_connectivity',
          'Cell',
          'Individual',
          'has_region_connectivity',
          'NBLAST',
          'Nervous_system',
          'Neuron'],
         'label': 'KCg-t_R - 1392655948',
         'short_form': 'VFB_jrchjwih'}},
       {'channel_image': {'channel': {'iri': 'http://virtualflybrain.org/reports/VFBc_jrchjwih',
          'symbol': '',
          'types': ['Entity', 'Individual'],
          'label': 'KCg-t_R - 1392655948_c',
          'short_form': 'VFBc_jrchjwih'},
         'image': {'template_channel': {'iri': 'http://virtualflybrain.org/reports/VFBc_00101384',
           'symbol': '',
           'types': ['Entity', 'Individual', 'Template'],
           'label': 'JRC_FlyEM_Hemibrain_c',
           'short_form': 'VFBc_00101384'},
          'index': [],
          'template_anatomy': {'iri': 'http://virtualflybrain.org/reports/VFB_00101384',
           'symbol': '',
           'types': ['Entity',
            'has_image',
            'Adult',
            'Anatomy',
            'Nervous_system',
            'Individual',
            'Template'],
           'label': 'JRC_FlyEM_Hemibrain',
           'short_form': 'VFB_00101384'},
          'image_folder': 'http://www.virtualflybrain.org/data/VFB/i/jrch/jwih/VFB_00101384/'},
         'imaging_technique': {'iri': 'http://purl.obolibrary.org/obo/FBbi_00050000',
          'symbol': 'FIB-SEM',
          'types': ['Entity', 'Class'],
          'label': 'focussed ion beam scanning electron microscopy (FIB-SEM)',
          'short_form': 'FBbi_00050000'}},
        'anatomy': {'iri': 'http://virtualflybrain.org/reports/VFB_jrchjwih',
         'symbol': '',
         'types': ['Entity',
          'has_image',
          'Adult',
          'Anatomy',
          'has_neuron_connectivity',
          'Cell',
          'Individual',
          'has_region_connectivity',
          'NBLAST',
          'Nervous_system',
          'Neuron'],
         'label': 'KCg-t_R - 1392655948',
         'short_form': 'VFB_jrchjwih'}},
       {'channel_image': {'channel': {'iri': 'http://virtualflybrain.org/reports/VFBc_jrchjwii',
          'symbol': '',
          'types': ['Entity', 'Individual'],
          'label': 'KCg-t_R - 785918963_c',
          'short_form': 'VFBc_jrchjwii'},
         'image': {'template_channel': {'iri': 'http://virtualflybrain.org/reports/VFBc_00101567',
           'symbol': '',
           'types': ['Entity', 'Individual', 'Template'],
           'label': 'JRC2018Unisex_c',
           'short_form': 'VFBc_00101567'},
          'index': [],
          'template_anatomy': {'iri': 'http://virtualflybrain.org/reports/VFB_00101567',
           'symbol': '',
           'types': ['Entity',
            'has_image',
            'Adult',
            'Anatomy',
            'Nervous_system',
            'Individual',
            'Template'],
           'label': 'JRC2018Unisex',
           'short_form': 'VFB_00101567'},
          'image_folder': 'http://www.virtualflybrain.org/data/VFB/i/jrch/jwii/VFB_00101567/'},
         'imaging_technique': {'iri': 'http://purl.obolibrary.org/obo/FBbi_00050000',
          'symbol': 'FIB-SEM',
          'types': ['Entity', 'Class'],
          'label': 'focussed ion beam scanning electron microscopy (FIB-SEM)',
          'short_form': 'FBbi_00050000'}},
        'anatomy': {'iri': 'http://virtualflybrain.org/reports/VFB_jrchjwii',
         'symbol': '',
         'types': ['Entity',
          'has_image',
          'Adult',
          'Anatomy',
          'has_neuron_connectivity',
          'Cell',
          'Individual',
          'has_region_connectivity',
          'NBLAST',
          'Nervous_system',
          'Neuron'],
         'label': 'KCg-t_R - 785918963',
         'short_form': 'VFB_jrchjwii'}}],
      'pub_syn': [{'pub': {'core': {'iri': 'http://flybase.org/reports/Unattributed',
          'symbol': '',
          'types': ['Entity', 'Individual', 'pub'],
          'label': '',
          'short_form': 'Unattributed'},
         'FlyBase': '',
         'PubMed': '',
         'DOI': ''},
        'synonym': {'type': '', 'label': 'KC', 'scope': 'has_exact_synonym'}},
       {'pub': {'core': {'iri': 'http://flybase.org/reports/FBrf0236359',
          'symbol': '',
          'types': ['Entity', 'Individual', 'pub'],
          'label': 'Eichler et al., 2017, Nature 548(7666): 175--182',
          'short_form': 'FBrf0236359'},
         'FlyBase': 'FBrf0236359',
         'PubMed': '28796202',
         'DOI': '10.1038/nature23455'},
        'synonym': {'type': '',
         'label': 'mature Kenyon cell',
         'scope': 'has_exact_synonym'}},
       {'pub': {'core': {'iri': 'http://flybase.org/reports/FBrf0111409',
          'symbol': '',
          'types': ['Entity', 'Individual', 'pub'],
          'label': 'Lee et al., 1999, Development 126(18): 4065--4076',
          'short_form': 'FBrf0111409'},
         'FlyBase': '',
         'PubMed': '10457015',
         'DOI': ''},
        'synonym': {'type': '',
         'label': 'MB neuron',
         'scope': 'has_narrow_synonym'}}],
      'def_pubs': [{'core': {'iri': 'http://flybase.org/reports/FBrf0214059',
         'symbol': '',
         'types': ['Entity', 'Individual', 'pub'],
         'label': 'Christiansen et al., 2011, J. Neurosci. 31(26): 9696--9707',
         'short_form': 'FBrf0214059'},
        'FlyBase': '',
        'PubMed': '21715635',
        'DOI': '10.1523/JNEUROSCI.6542-10.2011'},
       {'core': {'iri': 'http://flybase.org/reports/FBrf0092568',
         'symbol': '',
         'types': ['Entity', 'Individual', 'pub'],
         'label': 'Ito et al., 1997, Development 124(4): 761--771',
         'short_form': 'FBrf0092568'},
        'FlyBase': '',
        'PubMed': '9043058',
        'DOI': ''},
       {'core': {'iri': 'http://flybase.org/reports/FBrf0205263',
         'symbol': '',
         'types': ['Entity', 'Individual', 'pub'],
         'label': 'Tanaka et al., 2008, J. Comp. Neurol. 508(5): 711--755',
         'short_form': 'FBrf0205263'},
        'FlyBase': '',
        'PubMed': '18395827',
        'DOI': '10.1002/cne.21692'}]}]

# A query for summary info
import pandas as pd

summary = vc.neo_query_wrapper.get_type_TermInfo(['FBbt_00003686'], summary=True)
summary_tab = pd.DataFrame.from_records(summary)
summary_tab

label symbol id tags parents_label parents_id
0 Kenyon cell FBbt_00003686 Entity|Anatomy|Nervous_system|Cell|Neuron|Class supraesophageal ganglion neuron|mushroom body ... FBbt_00001366|FBbt_00007484 
# A different method is needed to get info about individual neurons

summary = vc.neo_query_wrapper.get_anatomical_individual_TermInfo(['VFB_jrchjrch'], summary=True)
summary_tab = pd.DataFrame.from_records(summary)
summary_tab

label symbol id tags parents_label parents_id data_source accession templates dataset license
0 5-HTPLP01_R - 1324365879 VFB_jrchjrch Entity|has_image|Adult|Anatomy|has_neuron_conn... adult serotonergic PLP neuron FBbt_00110945 neuprint_JRC_Hemibrain_1point1 1324365879 JRC_FlyEM_Hemibrain|JRC2018Unisex Xu2020NeuronsV1point1 https://creativecommons.org/licenses/by/4.0/le...

1.2 The neo_query_wrapper also includes methods for mapping between IDs from different sources.

# Some bodyIDs of HemiBrain neurons from the neuprint DataBase:
bodyIDs = [1068958652, 571424748, 1141631198]
vc.neo_query_wrapper.xref_2_vfb_id(map(str, bodyIDs)) # Note IDs must be strings


    {'1068958652': [{'db': 'neuronbridge', 'vfb_id': 'VFB_jrchjwda'},
      {'db': 'neuronbridge', 'vfb_id': 'VFB_jrch06r9'},
      {'db': 'neuprint_JRC_Hemibrain_1point0point1', 'vfb_id': 'VFB_jrch06r9'},
      {'db': 'neuprint_JRC_Hemibrain_1point1', 'vfb_id': 'VFB_jrchjwda'}],
     '571424748': [{'db': 'neuronbridge', 'vfb_id': 'VFB_jrch06r6'},
      {'db': 'neuronbridge', 'vfb_id': 'VFB_jrchjwct'},
      {'db': 'neuprint_JRC_Hemibrain_1point0point1', 'vfb_id': 'VFB_jrch06r6'},
      {'db': 'neuprint_JRC_Hemibrain_1point1', 'vfb_id': 'VFB_jrchjwct'}],
     '1141631198': [{'db': 'neuronbridge', 'vfb_id': 'VFB_jrch05uz'},
      {'db': 'neuronbridge', 'vfb_id': 'VFB_jrchjw8r'},
      {'db': 'neuprint_JRC_Hemibrain_1point0point1', 'vfb_id': 'VFB_jrch05uz'},
      {'db': 'neuprint_JRC_Hemibrain_1point1', 'vfb_id': 'VFB_jrchjw8r'}]}

# xref queries can be constrained by DB. Results can optionally be reversed

vc.neo_query_wrapper.xref_2_vfb_id(map(str, bodyIDs), db = 'neuprint_JRC_Hemibrain_1point1' , reverse_return=True)

    {'VFB_jrchjw8r': [{'acc': '1141631198',
       'db': 'neuprint_JRC_Hemibrain_1point1'}],
     'VFB_jrchjwct': [{'acc': '571424748',
       'db': 'neuprint_JRC_Hemibrain_1point1'}],
     'VFB_jrchjwda': [{'acc': '1068958652',
       'db': 'neuprint_JRC_Hemibrain_1point1'}]}

2. vc direct methods overview

2.1 Methods that take the names of classes in VFB e.g. ’nodulus’ or ‘Kenyon cell’, or simple query expressions using the names of classes and return metadata about the classes or individual neurons

KC_types = vc.get_subclasses("Kenyon cell", summary=True)
pd.DataFrame.from_records(KC_types)

    Running query: FBbt:00003686
    Query URL: http://owl.virtualflybrain.org/kbs/vfb/subclasses?object=FBbt%3A00003686&prefixes=%7B%22FBbt%22%3A+%22http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FFBbt_%22%2C+%22RO%22%3A+%22http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FRO_%22%2C+%22BFO%22%3A+%22http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FBFO_%22%7D&direct=False
    Query results: 37

label symbol id tags parents_label parents_id
0 adult alpha'/beta' Kenyon cell FBbt_00049834 Entity|Adult|Anatomy|Nervous_system|Cell|Neuro... alpha'/beta' Kenyon cell|adult Kenyon cell FBbt_00100249|FBbt_00049825
1 immature Kenyon cell FBbt_00047995 Entity|Anatomy|Nervous_system|Cell|Neuron|Class Kenyon cell FBbt_00003686
2 gamma Kenyon cell FBbt_00100247 Entity|Anatomy|Nervous_system|Cell|Neuron|Class Kenyon cell FBbt_00003686
3 adult Kenyon cell FBbt_00049825 Entity|Adult|Anatomy|Nervous_system|Cell|Neuro... adult MBp lineage neuron|Kenyon cell FBbt_00110577|FBbt_00003686
4 gamma main Kenyon cell KCg-m FBbt_00111061 Entity|Adult|Anatomy|Nervous_system|Cell|Neuro... Kenyon cell of main calyx|adult gamma Kenyon cell FBbt_00047926|FBbt_00049828
5 alpha'/beta' anterior-posterior type 1 Kenyon ... FBbt_00049859 Entity|Adult|Anatomy|Nervous_system|Cell|Neuro... alpha'/beta' anterior-posterior type 1 Kenyon ... FBbt_00049836
6 alpha/beta Kenyon cell FBbt_00100248 Entity|Neuron|Adult|Anatomy|Nervous_system|Cel... cholinergic neuron|adult Kenyon cell FBbt_00007173|FBbt_00049825
7 gamma-s4 Kenyon cell KCg-s4 FBbt_00049832 Entity|Adult|Anatomy|Nervous_system|Cell|Neuro... gamma-s Kenyon cell FBbt_00049830
8 two-claw Kenyon cell FBbt_00047997 Entity|Anatomy|Nervous_system|Cell|Neuron|Class multi-claw Kenyon cell FBbt_00047994
9 single-claw Kenyon cell FBbt_00047993 Entity|Anatomy|Nervous_system|Cell|Neuron|Class Kenyon cell FBbt_00003686
10 alpha/beta posterior Kenyon cell KCab-p FBbt_00110931 Entity|Neuron|Adult|Anatomy|Nervous_system|Cel... alpha/beta Kenyon cell FBbt_00100248
11 alpha'/beta' middle Kenyon cell KCa'b'-m FBbt_00100253 Entity|Adult|Anatomy|Nervous_system|Cell|Neuro... Kenyon cell of main calyx|adult alpha'/beta' K... FBbt_00047926|FBbt_00049834
12 alpha/beta surface Kenyon cell KCab-s FBbt_00110930 Entity|Neuron|Adult|Anatomy|Nervous_system|Cel... alpha/beta surface/core Kenyon cell FBbt_00049838
13 alpha'/beta' anterior-posterior type 1 Kenyon ... KCa'b'-ap1 FBbt_00049836 Entity|Adult|Anatomy|Nervous_system|Cell|Neuro... alpha'/beta' anterior-posterior Kenyon cell FBbt_00100250
14 larval alpha'/beta' Kenyon cell FBbt_00049835 Entity|Neuron|Anatomy|Nervous_system|Cell|Larv... larval Kenyon cell|alpha'/beta' Kenyon cell FBbt_00049826|FBbt_00100249
15 gamma-s1 Kenyon cell KCg-s1 FBbt_00049787 Entity|Adult|Anatomy|Nervous_system|Cell|Neuro... gamma-s Kenyon cell FBbt_00049830
16 gamma-t Kenyon cell KCg-t FBbt_00049833 Entity|Adult|Anatomy|Nervous_system|Cell|Neuro... adult gamma Kenyon cell FBbt_00049828
17 four-claw Kenyon cell FBbt_00047999 Entity|Anatomy|Nervous_system|Cell|Neuron|Class multi-claw Kenyon cell FBbt_00047994
18 alpha'/beta' Kenyon cell FBbt_00100249 Entity|Anatomy|Nervous_system|Cell|Neuron|Class Kenyon cell FBbt_00003686
19 alpha/beta surface/core Kenyon cell FBbt_00049838 Entity|Neuron|Adult|Anatomy|Nervous_system|Cel... Kenyon cell of main calyx|alpha/beta Kenyon cell FBbt_00047926|FBbt_00100248
20 larval Kenyon cell FBbt_00049826 Entity|Neuron|Anatomy|Nervous_system|Cell|Larv... Kenyon cell|embryonic/larval neuron FBbt_00003686|FBbt_00001446
21 alpha'/beta' anterior-posterior Kenyon cell FBbt_00100250 Entity|Adult|Anatomy|Nervous_system|Cell|Neuro... adult alpha'/beta' Kenyon cell FBbt_00049834
22 six-claw Kenyon cell FBbt_00048001 Entity|Anatomy|Nervous_system|Cell|Neuron|Class multi-claw Kenyon cell FBbt_00047994
23 Kenyon cell of main calyx FBbt_00047926 Entity|Adult|Anatomy|Nervous_system|Cell|Neuro... adult Kenyon cell FBbt_00049825
24 alpha'/beta' anterior-posterior type 2 Kenyon ... KCa'b'-ap2 FBbt_00049837 Entity|Adult|Anatomy|Nervous_system|Cell|Neuro... alpha'/beta' anterior-posterior Kenyon cell|Ke... FBbt_00100250|FBbt_00047926
25 gamma-s3 Kenyon cell KCg-s3 FBbt_00049831 Entity|Adult|Anatomy|Nervous_system|Cell|Neuro... gamma-s Kenyon cell FBbt_00049830
26 alpha/beta inner-core Kenyon cell FBbt_00049111 Entity|Neuron|Adult|Anatomy|Nervous_system|Cel... alpha/beta core Kenyon cell FBbt_00110929
27 gamma dorsal Kenyon cell KCg-d FBbt_00110932 Entity|Adult|Anatomy|Nervous_system|Cell|Neuro... adult gamma Kenyon cell FBbt_00049828
28 alpha/beta outer-core Kenyon cell FBbt_00049112 Entity|Neuron|Adult|Anatomy|Nervous_system|Cel... alpha/beta core Kenyon cell FBbt_00110929
29 five-claw Kenyon cell FBbt_00048000 Entity|Anatomy|Nervous_system|Cell|Neuron|Class multi-claw Kenyon cell FBbt_00047994
30 alpha/beta core Kenyon cell KCab-c FBbt_00110929 Entity|Neuron|Adult|Anatomy|Nervous_system|Cel... alpha/beta surface/core Kenyon cell FBbt_00049838
31 multi-claw Kenyon cell FBbt_00047994 Entity|Anatomy|Nervous_system|Cell|Neuron|Class Kenyon cell FBbt_00003686
32 adult gamma Kenyon cell FBbt_00049828 Entity|Adult|Anatomy|Nervous_system|Cell|Neuro... gamma Kenyon cell|adult Kenyon cell FBbt_00100247|FBbt_00049825
33 three-claw Kenyon cell FBbt_00047998 Entity|Anatomy|Nervous_system|Cell|Neuron|Class multi-claw Kenyon cell FBbt_00047994
34 larval gamma Kenyon cell FBbt_00049827 Entity|Neuron|Anatomy|Nervous_system|Cell|Larv... larval Kenyon cell|gamma Kenyon cell FBbt_00049826|FBbt_00100247
35 gamma-s2 Kenyon cell KCg-s2 FBbt_00049788 Entity|Adult|Anatomy|Nervous_system|Cell|Neuro... gamma-s Kenyon cell FBbt_00049830
36 gamma-s Kenyon cell FBbt_00049830 Entity|Adult|Anatomy|Nervous_system|Cell|Neuro... adult gamma Kenyon cell FBbt_00049828

2.2 Methods for querying connectivity

Please see Connectivity Notebook for examples


Last modified May 16, 2023: fix formatting (3e0894d)