connected anatomical structure [CARO_0000003]

Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism’s own genome. Note that the definition does not say ‘generated exclusively by the co-ordinated expression of the organism’s own genome’, so this is still valid for cases where normal morphogenesis requires the actions of a facultative symbiont, or some looser dependency such as the a requirement for the presence of gut flora for normal gut development.

Open connected anatomical structure in VFB

Example Images

connected anatomical structure connected anatomical structure connected anatomical structure connected anatomical structure connected anatomical structure

VFB Term Json

{
    "term": {
        "core": {
            "iri": "http://purl.obolibrary.org/obo/CARO_0000003",
            "symbol": "",
            "types": [
                "Entity",
                "Anatomy",
                "Class"
            ],
            "short_form": "CARO_0000003",
            "label": "connected anatomical structure"
        },
        "description": [
            "Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome."
        ],
        "comment": [
            "Note that the definition does not say 'generated exclusively by the co-ordinated expression of the organism's own genome', so this is still valid for cases where normal morphogenesis requires the actions of a facultative symbiont, or some looser dependency such as the a requirement for the presence of gut flora for normal gut development."
        ]
    },
    "query": "Get JSON for Class",
    "version": "44725ae",
    "parents": [
        {
            "symbol": "",
            "iri": "http://purl.obolibrary.org/obo/CARO_0000006",
            "types": [
                "Entity",
                "Anatomy",
                "Class"
            ],
            "short_form": "CARO_0000006",
            "label": "material anatomical entity"
        }
    ],
    "relationships": [
        {
            "relation": {
                "iri": "http://purl.obolibrary.org/obo/RO_0000053",
                "label": "bearer of",
                "type": "bearer_of"
            },
            "object": {
                "symbol": "",
                "iri": "http://purl.obolibrary.org/obo/PATO_0002266",
                "types": [
                    "Entity",
                    "Class"
                ],
                "short_form": "PATO_0002266",
                "label": "3-D shape"
            }
        },
        {
            "relation": {
                "iri": "http://purl.obolibrary.org/obo/RO_0000053",
                "label": "bearer of",
                "type": "bearer_of"
            },
            "object": {
                "symbol": "",
                "iri": "http://purl.obolibrary.org/obo/PATO_0010000",
                "types": [
                    "Entity",
                    "Class"
                ],
                "short_form": "PATO_0010000",
                "label": "maximally connected"
            }
        }
    ],
    "xrefs": [],
    "anatomy_channel_image": [
        {
            "anatomy": {
                "symbol": "",
                "iri": "http://virtualflybrain.org/reports/VFB_00030613",
                "types": [
                    "Entity",
                    "Adult",
                    "Anatomy",
                    "Individual",
                    "Nervous_system",
                    "Synaptic_neuropil",
                    "Synaptic_neuropil_domain",
                    "VFB",
                    "has_image"
                ],
                "short_form": "VFB_00030613",
                "label": "antennal mechanosensory and motor center on adult brain template JFRC2"
            },
            "channel_image": {
                "image": {
                    "template_channel": {
                        "symbol": "",
                        "iri": "http://virtualflybrain.org/reports/VFBc_00017894",
                        "types": [
                            "Entity",
                            "Individual",
                            "Template",
                            "VFB"
                        ],
                        "short_form": "VFBc_00017894",
                        "label": "JFRC2_template_c"
                    },
                    "index": [
                        11
                    ],
                    "template_anatomy": {
                        "symbol": "",
                        "iri": "http://virtualflybrain.org/reports/VFB_00017894",
                        "types": [
                            "Entity",
                            "Adult",
                            "Anatomy",
                            "Individual",
                            "Nervous_system",
                            "Template",
                            "VFB",
                            "has_image"
                        ],
                        "short_form": "VFB_00017894",
                        "label": "adult brain template JFRC2"
                    },
                    "image_folder": "http://www.virtualflybrain.org/data/VFB/i/0003/0613/"
                },
                "channel": {
                    "symbol": "",
                    "iri": "http://virtualflybrain.org/reports/VFBc_00030613",
                    "types": [
                        "Entity",
                        "Individual",
                        "VFB"
                    ],
                    "short_form": "VFBc_00030613",
                    "label": "AMMC_JFRC_c"
                },
                "imaging_technique": {
                    "symbol": "",
                    "iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
                    "types": [
                        "Entity",
                        "Class"
                    ],
                    "short_form": "FBbi_00000224",
                    "label": "computer graphic"
                }
            }
        },
        {
            "anatomy": {
                "symbol": "",
                "iri": "http://virtualflybrain.org/reports/VFB_00030796",
                "types": [
                    "Entity",
                    "Adult",
                    "Anatomy",
                    "Individual",
                    "Nervous_system",
                    "Synaptic_neuropil",
                    "Synaptic_neuropil_domain",
                    "VFB",
                    "has_image"
                ],
                "short_form": "VFB_00030796",
                "label": "antennal mechanosensory and motor center on adult brain template Ito2014"
            },
            "channel_image": {
                "image": {
                    "template_channel": {
                        "symbol": "",
                        "iri": "http://virtualflybrain.org/reports/VFBc_00030786",
                        "types": [
                            "Entity",
                            "Individual",
                            "Template",
                            "VFB"
                        ],
                        "short_form": "VFBc_00030786",
                        "label": "BrainName standard - Ito half brain c"
                    },
                    "index": [
                        10
                    ],
                    "template_anatomy": {
                        "symbol": "",
                        "iri": "http://virtualflybrain.org/reports/VFB_00030786",
                        "types": [
                            "Entity",
                            "Adult",
                            "Anatomy",
                            "Individual",
                            "Nervous_system",
                            "Template",
                            "VFB",
                            "has_image"
                        ],
                        "short_form": "VFB_00030786",
                        "label": "adult brain template Ito2014"
                    },
                    "image_folder": "http://www.virtualflybrain.org/data/VFB/i/0003/0796/"
                },
                "channel": {
                    "symbol": "",
                    "iri": "http://virtualflybrain.org/reports/VFBc_00030796",
                    "types": [
                        "Entity",
                        "Individual",
                        "VFB"
                    ],
                    "short_form": "VFBc_00030796",
                    "label": "AMMC_AN - painted domain, BrainName pub_c"
                },
                "imaging_technique": {
                    "symbol": "",
                    "iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
                    "types": [
                        "Entity",
                        "Class"
                    ],
                    "short_form": "FBbi_00000224",
                    "label": "computer graphic"
                }
            }
        },
        {
            "anatomy": {
                "symbol": "",
                "iri": "http://virtualflybrain.org/reports/VFB_00101457",
                "types": [
                    "Entity",
                    "Adult",
                    "Anatomy",
                    "Individual",
                    "Nervous_system",
                    "Synaptic_neuropil",
                    "Synaptic_neuropil_domain",
                    "has_image"
                ],
                "short_form": "VFB_00101457",
                "label": "AMMC on JRC_FlyEM_Hemibrain"
            },
            "channel_image": {
                "image": {
                    "template_channel": {
                        "symbol": "",
                        "iri": "http://virtualflybrain.org/reports/VFBc_00101384",
                        "types": [
                            "Entity",
                            "Individual",
                            "Template"
                        ],
                        "short_form": "VFBc_00101384",
                        "label": "JRC_FlyEM_Hemibrain_c"
                    },
                    "index": [
                        46
                    ],
                    "template_anatomy": {
                        "symbol": "",
                        "iri": "http://virtualflybrain.org/reports/VFB_00101384",
                        "types": [
                            "Entity",
                            "Adult",
                            "Anatomy",
                            "Individual",
                            "Nervous_system",
                            "Template",
                            "has_image"
                        ],
                        "short_form": "VFB_00101384",
                        "label": "JRC_FlyEM_Hemibrain"
                    },
                    "image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/1457/VFB_00101384/"
                },
                "channel": {
                    "symbol": "",
                    "iri": "http://virtualflybrain.org/reports/VFBc_00101457",
                    "types": [
                        "Entity",
                        "Individual"
                    ],
                    "short_form": "VFBc_00101457",
                    "label": "AMMCon JRC_FlyEM_Hemibrain_c"
                },
                "imaging_technique": {
                    "symbol": "",
                    "iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
                    "types": [
                        "Entity",
                        "Class"
                    ],
                    "short_form": "FBbi_00000224",
                    "label": "computer graphic"
                }
            }
        },
        {
            "anatomy": {
                "symbol": "",
                "iri": "http://virtualflybrain.org/reports/VFB_00102273",
                "types": [
                    "Entity",
                    "Adult",
                    "Anatomy",
                    "Individual",
                    "Nervous_system",
                    "Synaptic_neuropil",
                    "Synaptic_neuropil_domain",
                    "has_image"
                ],
                "short_form": "VFB_00102273",
                "label": "AMMC on JRC2018Unisex adult brain"
            },
            "channel_image": {
                "image": {
                    "template_channel": {
                        "symbol": "",
                        "iri": "http://virtualflybrain.org/reports/VFBc_00101567",
                        "types": [
                            "Entity",
                            "Individual",
                            "Template"
                        ],
                        "short_form": "VFBc_00101567",
                        "label": "JRC2018Unisex_c"
                    },
                    "index": [
                        46
                    ],
                    "template_anatomy": {
                        "symbol": "",
                        "iri": "http://virtualflybrain.org/reports/VFB_00101567",
                        "types": [
                            "Entity",
                            "Adult",
                            "Anatomy",
                            "Individual",
                            "Nervous_system",
                            "Template",
                            "has_image"
                        ],
                        "short_form": "VFB_00101567",
                        "label": "JRC2018Unisex"
                    },
                    "image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/2273/VFB_00101567/"
                },
                "channel": {
                    "symbol": "",
                    "iri": "http://virtualflybrain.org/reports/VFBc_00102273",
                    "types": [
                        "Entity",
                        "Individual"
                    ],
                    "short_form": "VFBc_00102273",
                    "label": "AMMC on JRC2018Unisex adult brain_c"
                },
                "imaging_technique": {
                    "symbol": "",
                    "iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
                    "types": [
                        "Entity",
                        "Class"
                    ],
                    "short_form": "FBbi_00000224",
                    "label": "computer graphic"
                }
            }
        },
        {
            "anatomy": {
                "symbol": "",
                "iri": "http://virtualflybrain.org/reports/VFB_00100016",
                "types": [
                    "Entity",
                    "Adult",
                    "Anatomy",
                    "Individual",
                    "Nervous_system",
                    "Neuron_projection_bundle",
                    "has_image"
                ],
                "short_form": "VFB_00100016",
                "label": "prothoracic leg nerve on adult VNS template, Court2018"
            },
            "channel_image": {
                "image": {
                    "template_channel": {
                        "symbol": "",
                        "iri": "http://virtualflybrain.org/reports/VFBc_00100000",
                        "types": [
                            "Entity",
                            "Individual",
                            "Template"
                        ],
                        "short_form": "VFBc_00100000",
                        "label": "adult VNS template - Court2018_c"
                    },
                    "index": [
                        16
                    ],
                    "template_anatomy": {
                        "symbol": "",
                        "iri": "http://virtualflybrain.org/reports/VFB_00100000",
                        "types": [
                            "Entity",
                            "Adult",
                            "Anatomy",
                            "Ganglion",
                            "Individual",
                            "Nervous_system",
                            "Template",
                            "has_image"
                        ],
                        "short_form": "VFB_00100000",
                        "label": "adult VNS template - Court2018"
                    },
                    "image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/0016/"
                },
                "channel": {
                    "symbol": "",
                    "iri": "http://virtualflybrain.org/reports/VFBc_00100016",
                    "types": [
                        "Entity",
                        "Individual"
                    ],
                    "short_form": "VFBc_00100016",
                    "label": "prothoracic leg nerve on adult VNS template, Court2018_c"
                },
                "imaging_technique": {
                    "symbol": "",
                    "iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
                    "types": [
                        "Entity",
                        "Class"
                    ],
                    "short_form": "FBbi_00000224",
                    "label": "computer graphic"
                }
            }
        }
    ],
    "pub_syn": [],
    "def_pubs": [
        {
            "core": {
                "symbol": "",
                "iri": "http://flybase.org/reports/Unattributed",
                "types": [
                    "Entity",
                    "Individual",
                    "pub"
                ],
                "short_form": "Unattributed",
                "label": ""
            },
            "FlyBase": "",
            "PubMed": "",
            "DOI": ""
        }
    ]
}