RNA polymerase II cis-regulatory region sequence-specific DNA binding [GO_0000978]

Binding to a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase II. Note that the phrase “upstream activating sequence”, or UAS is often used in S. cerevisiae literature to refer to cis-regulatory sequences. In bacteria such as E. coli, the phrase “upstream activating sequence”, or UAS is usually a synonym for “enhancer”.

Open RNA polymerase II cis-regulatory region sequence-specific DNA binding in VFB

VFB Term Json

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            "short_form": "GO_0000978",
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        },
        "description": [
            "Binding to a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase II."
        ],
        "comment": [
            "Note that the phrase \"upstream activating sequence\", or UAS is often used in S. cerevisiae literature to refer to cis-regulatory sequences. In bacteria such as E. coli, the phrase \"upstream activating sequence\", or UAS is usually a synonym for \"enhancer\"."
        ]
    },
    "query": "Get JSON for Class",
    "version": "44725ae",
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            "short_form": "GO_0000977",
            "label": "RNA polymerase II transcription regulatory region sequence-specific DNA binding"
        },
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        {
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